Biologist Resurrects 3.2 Billion-Year-Old Enzyme: Discoveries in Ancient Biology | Science News

A groundbreaking research team from the University of Wisconsin-Madison has successfully reverse-engineered a primitive nitrogen-fixing enzyme. This discovery sheds light on how life thrived before the Earth was transformed by oxygen and establishes reliable chemical markers for detecting extraterrestrial life.



Resurrection and characterization of an ancestral nitrogenase. Image credit: Rucker et al., doi: 10.1038/s41467-025-67423-y.

Led by Professor Betül Kaçar, the research focuses on an essential enzyme known as nitrogenase, which plays a pivotal role in converting atmospheric nitrogen into bioavailable forms.

“We selected an enzyme that significantly influences life on Earth and investigated its evolutionary history,” Professor Kaçar stated.

“Without nitrogenase, the existence of modern life as we know it would be impossible.”

Traditionally, scientists have depended on geological evidence to reconstruct Earth’s historical life.

However, significant fossils and rock samples are scarce and often require fortuitous discovery.

Professor Kaçar and his team view synthetic biology as a valuable tool to bridge these gaps, allowing them to construct specific ancient enzyme reconstructions, insert these into microorganisms, and study them in contemporary lab settings.

“The Earth of 3 billion years ago was vastly different from the world we recognize today,” remarked Dr. Holly Rucker.

“Before the Great Oxidation Event, the atmosphere was rich in carbon dioxide and methane, and life predominantly consisted of anaerobic microorganisms.”

“Understanding how these microorganisms accessed vital nutrients like nitrogen enhances our comprehension of how life persisted and evolved before oxygen-dependent organisms began to alter the planet.”

“Though fossilized enzymes are unavailable for study, these enzymes can leave discernible isotopic traces, measurable in rock samples.”

“Much of the prior research assumed ancient enzymes produced isotopic signatures akin to modern enzymes,” added Dr. Rucker.

“This holds true for nitrogenase; the isotopic traces we observe from ancient times correspond with modern signatures, providing deeper insights into the enzyme itself.”

The researchers discovered that ancient nitrogenase enzymes, despite having different DNA sequences, maintain the same mechanisms for isotopic signatures observed in the rock record.

“As astrobiologists, our understanding of Earth helps us comprehend the potential for life elsewhere in the universe,” Professor Kaçar emphasized.

“The quest for life begins right here on our 4-billion-year-old planet.”

“To grasp future possibilities and life beyond our planet, we must first understand our own history.”

The results were published today in the online journal Nature Communications, accessible here.

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Rucker et al. 2026. The revived nitrogenase reproduces the standard N isotope biosignature spanning two billion years. Nat Commun 17,616; doi: 10.1038/s41467-025-67423-y

Source: www.sci.news

Scientists Uncover 1.4 Billion-Year-Old Salt Crystals with Ancient Bubbles

In a groundbreaking study, researchers uncovered ancient gases and fluids trapped within 1.4 billion-year-old rock salt crystals in northern Ontario, Canada. Their analysis reveals that oxygen and carbon dioxide concentrations during the Mesoproterozoic Era (1.8 billion to 800 million years ago) were suppressed to just 3.7% of current levels, while carbon dioxide was found to be ten times pre-industrial levels. These findings indicate a period of climatic stability, suggesting atmospheric oxygen levels temporarily exceeded the needs of early animals long before their emergence.

Examples of primary halite, mixed halite, and secondary halite rock inclusion aggregates. Image credit: Park et al., doi: 10.1073/pnas.2513030122.

Scientists have long recognized that liquid inclusions within rock salt crystals preserve samples of Earth’s primordial atmosphere.

However, accurately measuring these inclusions has presented significant challenges. These inclusions encompass both air bubbles and saline water, with gases like oxygen and carbon dioxide interacting differently in liquids compared to air.

“It’s astonishing to crack open a sample of air that is over a billion years older than the dinosaurs,” said Justin Park, a graduate student at Rensselaer Polytechnic Institute.

“Our carbon dioxide measurements are unprecedented,” stated Morgan Schaller, a professor at Rensselaer Polytechnic Institute.

“For the first time, we can trace this era of Earth’s history with remarkable precision. These are authentic samples of ancient air.”

Measurements indicate that Mesoproterozoic atmospheric oxygen levels sat at 3.7%, mirroring today’s levels. This high oxygen concentration was sufficient to support the existence of complex multicellular life, which would not arise for hundreds of millions of years.

Conversely, carbon dioxide was found to be ten times more abundant than present levels, effectively counterbalancing the “weak young sun” and fostering the climate conditions seen today.

One pivotal question arises: if oxygen levels were adequate for animal life, why did evolution take so long?

“This sample represents a snapshot in geological time,” Park explained.

“It may reflect a brief oxygenation event during this lengthy period, humorously dubbed the ‘billion boring years.'”

“This era in Earth’s history was marked by low oxygen levels, geological stability, and minimal evolutionary change.”

“Despite its moniker, direct observational data from this time is crucial for understanding the emergence of complex life and the evolution of our atmosphere.”

Prior indirect estimates suggested low carbon dioxide levels for this epoch, contradicting evidence of a lack of significant glaciation during the Mesoproterozoic.

The team’s direct measurements of elevated carbon dioxide, alongside temperature estimates from the salt, imply that Mesoproterozoic climate conditions were milder and more akin to today’s climate than previously assumed.

“Algae began to flourish during this period, continuing to play a vital role in global oxygen production today,” Professor Schaller remarked.

“The relatively elevated oxygen levels may directly result from the increasing prevalence and complexity of algae.”

“The insights we gained could represent an exciting moment in what is otherwise regarded as a billion years of monotony.”

The team’s research paper has been published today in the Proceedings of the National Academy of Sciences.

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Justin G. Park et al.. 2025. Bringing the Boring Billion to Life: Direct constraints from 1.4 Ga fluid inclusions reveal a favorable climate and oxygen-rich atmosphere. PNAS 122 (52): e2513030122; doi: 10.1073/pnas.2513030122

Source: www.sci.news

Living microorganisms found in ancient 2 billion-year-old rocks by microbiologists

Researchers from the University of Tokyo and others have discovered pockets of living microorganisms in mineral-filled veins in 2 billion-year-old rocks taken from South Africa’s Bushveld Igneous Complex.



The 2-billion-year-old mafic rocks of the Bushveld Igneous Complex reveal veins filled with clay minerals colonized by indigenous microorganisms (stained green). Image provided by: Suzuki others., doi: 10.1007/s00248-024-02434-8.

“We didn’t know whether rocks from 2 billion years ago were habitable or not,” says Dr. Yohei Suzuki, a researcher at the University of Tokyo.

“This is a very interesting discovery because the oldest geological formations in which living microorganisms have been found were 100 million-year-old deposits beneath the ocean floor.”

“By studying the DNA and genomes of these microorganisms, we may be able to understand the evolution of very early life on Earth.”

Dr. Suzuki and his colleagues analyzed rock samples from the Bushveld Igneous Complex, a rock intrusion in northeastern South Africa that formed when magma slowly cooled beneath the earth’s surface.

“The Bushveld Igneous Complex covers an area of approximately 66,000 km2 (about the same size as Ireland), varies in thickness by up to 9 km, and contains approximately 70% of the platinum mined worldwide. , contains some of the richest mineral deposits on Earth,” they said.

“Due to the way it was formed and the minimal deformation and changes that have occurred since then, the BIC is thought to have provided a stable habitat for ancient microbial life that continues to this day.”

The core sample, measuring 8.5 cm in diameter and 30 cm in length, was taken from a depth of 15.28 meters with the assistance of the International Continental Scientific Drilling Program, a non-profit organization that funds exploration of geological sites.

By analyzing thin slices of the rock, the researchers found that the cracks in the rock were packed with live microbial cells.

The crevices near these cracks were clogged with clay, making it impossible for living things to get out of them or for anything else to get in.

The researchers built on previously developed techniques to ensure that the microbes were native to the rock samples and not due to contamination during the drilling or testing process.

By staining the DNA of microbial cells and using infrared spectroscopy to observe proteins in the microbes and the surrounding clay, they confirmed that the microbes were alive and uncontaminated.

“I am very interested in the possibility that subsurface microorganisms exist not only on Earth, but also on other planets,” said Dr. Suzuki.

“Rocks on Mars are generally much older (20 billion to 30 billion years ago), but NASA’s Perseverance rover is currently scheduled to return rocks that are similar in age to the rocks used in this study.”

“Now that we have discovered microbial life in a 2 billion-year-old Earth sample and have been able to accurately confirm its authenticity, we are excited to see what we will find in Mars samples in the future.”

of result Published in a magazine microbial ecology.

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Yuya Suzuki others. 2024. Subsurface microbial colonization of mineral-filled veins in 2 billion-year-old mafic rocks of the Bushveld Igneous Complex, South Africa. microorganism ecole 87, 116; doi: 10.1007/s00248-024-02434-8

This article is based on a press release from the University of Tokyo.

Source: www.sci.news