Insights from the Thylacine Genome Reveal Reasons for Its Extinction

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Thylacines were once found throughout Australia and New Guinea

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The extinction of crucial genes over the millennia since humans arrived in Australia may have made the thylacine more prone to extinction.

The thylacine, also known as the Tasmanian tiger (Thylacinus cynocephalus), was the last remaining member of a marsupial family called Thylacinidae, which once thrived in Australia and New Guinea.

It became extinct on mainland Australia around 2000 years ago, primarily due to human hunting and competition with dingoes. After European settlers arrived in Tasmania, the animal was targeted by farmers and government bounties, leading to the last of its kind dying in 1936 at Hobart Zoo.

Nagarjun Vijay and Buddha Bhashan Gilish Salv from the Institute of Science and Education in Bhopal, India, grew fascinated by the Tasmanian tiger’s genome while studying that of the Bengal tiger (Panthera tigris tigris).

“We noticed some parallels between the extinction of thylacines and our own tiger,” Vijay notes. “There’s a significant push to protect Indian tigers.”

The duo theorized that hypercarnivores like the Bengal and Tasmanian tigers may have lost vital genes through their evolutionary journey in response to environmental shifts and emerging diseases.

They examined genetic data previously obtained from thylacine specimens and compared these to the genome of the Tasmanian devil, a close relative (Sarcophilus harrisii), along with other marsupials.

Unlike nearly all other marsupials, including the Tasmanian devil, the thylacine has lost at least four crucial genes: SAMD9L, HSD17B13, CUZD1, and VWA7.

Vijay found it surprising that this genetic loss did not occur after Tasmania’s populace was isolated due to rising sea levels roughly 10,000 years ago.

This genetic loss may have been beneficial under certain historical conditions, but can hinder species health by diminishing antiviral defense, metabolic functions, lactation, as well as increasing susceptibility to cancer and pancreatitis.

Thylacines lost SAMD9L, CUZD1, and VWA7 at least 6 million years ago, coinciding with a significant climatic transition when species sizes increased dramatically, resulting in an oversaturation of carnivores entirely dependent on meat.

“The overarching narrative is that much of the human influence, or artificial changes, has perpetually shaped the extinction of thylacines,” Vijay states. “We speculated that there would be lost genes linked to disease, and that’s exactly what we uncovered.”

Timothy Churchill from the University of New South Wales in Sydney emphasizes that climate change over the course of human history has indeed led to a drastic decrease in genetic diversity among thylacines. He believes that the genetic losses identified in the new study may have rendered the Tasmanian tigers more vulnerable to illnesses, though confirming this requires additional research.

“It’s one of those species that truly survived against the odds for an extended period in that niche,” Churchill explains. “But once dingo-like canids arrived, it was the beginning of the end on the mainland. Then, of course, after creating adversaries in Tasmania, it marked their doom.”

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Source: www.newscientist.com

Paleontologists discover three new species of ancient thylacine fossils

Palaeontologists from the University of New South Wales have unearthed the fossils of three new species belonging to the thylacine genus. Basitinus, Nimbakinusand Ngamalasinas It inhabits upper Oligocene sediments in the Riversleigh World Heritage Area, northwest Queensland, Australia. Bassinus timforkneri, Nimbasinus peterbridgeand Ngamalasinas NigermalbeniThese new species are among the oldest known thylacines and indicate an earlier diversification of the family Thylacidae. Thylacine More than previously understood.

Bassinus timforkneri Eating a corpse Silvavestius Michaelvirti.Image credit: Peter Schouten.

The three new species of Pectiniidae lived during the Late Oligocene epoch, between 25 and 23 million years ago.

The largest of these is Bassinus timforkneriThey weigh between 7 and 11 kg, roughly the same size as a large Tasmanian devil.

“Like the Tasmanian devil, Basisinas timforkneri “They could easily crush the bones and teeth of their prey,” said lead author Tim Churchill, a doctoral student at the University of New South Wales.

“But up until now, we've only seen much smaller Bassinus TurnbulliiWeighing in at around 2.7 kg, this dinosaur is the only thylacine relative found in the Late Oligocene.

“The lower jaw and teeth, including an isolated first molar, were found at the Hiatus site at Riversleigh, which is even older than the White Hunter site where B. turnbrii was previously found.”

“This will Basisinas timforkneri It is undoubtedly the oldest thylacine ever discovered.”

The second species is Nimbasinus peterbridgeIt was slightly larger than a long-eared quoll and weighed about 3.7kg.

The species was described from a nearly complete jawbone from the White Hunter site at Riversleigh.

Nimbasinus peterbridge “It was probably a more generalist predator, targeting small mammals and other prey in the ancient woodland of Riversleigh,” Professor Mike Archer, from the University of New South Wales, said.

“We think it may have been directly related to only one other species. Nimbakinus,big Nimbasinus dicksoni (5-7kg) was discovered in 15 million year old deposits at Riversleigh.”

“This group of thylacines, Thylacine.”

“The other two new species described here appear to represent distinctive side branches on the increasingly complex thylacine phylogenetic tree.”

“This means Nimbasinus peterbridge It is probably the oldest known direct ancestor of the Tasmanian tiger.”

The third new species, Ngamalasinas NigermalbeniIt weighed about 5.1kg and was about the size of a red fox. This one was also unearthed at the White Hunter site in Riversleigh.

“This was a highly carnivorous thylacine,” said Dr Sue Hand, from the University of New South Wales.

“We know this because the cutting edges of the lower molars are elongated and have deep, V-shaped meat-cutting notches.”

Ngamalasinas Nigermalbeni These notches were more developed than in any other thylacine species of similar size.”

The existence of three distinct lineages of specialized thylacines in the Late Oligocene highlights how rapidly this group of marsupials has diversified since they first appeared in the fossil record, the researchers say.

“These new species have very different dental adaptations, suggesting that several unique carnivore forest niches existed during this time,” Churchill said.

“All of these lineages became extinct by 8 million years ago, except for the lineage that gave rise to modern thylacines.”

“The previous idea that Australia was dominated by reptilian carnivores for the last 25 million years is steadily being disproved as each new discovery adds to the fossil record of these new thylacine-like marsupial carnivores,” Prof Archer said.

“The diversity of mammalian carnivores in Rivers Leaf during this period rivals any other ecosystem, including the large dispersal of mammalian carnivores that developed in South America,” Churchill added.

of study this month, Journal of Vertebrate Paleontology.

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Timothy J. Churchill othersThree new opossum species (Marsupialia, Opossumidae) discovered from Late Oligocene deposits in the Riversleigh World Heritage Area, north-west Queensland. Journal of Vertebrate PaleontologyPublished online September 6, 2024; doi: 10.1080/02724634.2024.2384595

Source: www.sci.news